PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G139900.1
Common NameB456_006G139900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 246aa    MW: 26628.9 Da    PI: 6.7973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G139900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.95.8e-061662071055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Gorai.006G139900.1 166 KARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 207
                         56******************9....888999999999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.039156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-6159211No hitNo description
SMARTSM003532.0E-6161212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11166224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-11166223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MESKAGTTET RSNITASDGD QVAALESLQF TDEFHRLILA PPSDNATSLT ALLELPASRA  60
LELLHSPASA KLIAASASSF EALKGNFLFP SNTTLIDQAA RSSVFAGGVN NTNNKSNAPE  120
TTSNNATLNL EKAVKSEPAE TESCQPLVSD PAVEKRNFKR KDREKKARRE KINARMKLLQ  180
ELVPGCNKIS GTALVLDEII NHVQSLQNQV EFLSMRLAAV NPRTDFNLNS IFTTEFSAFF  240
RFGGN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.8520.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487474640.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485587.11e-159PREDICTED: transcription factor bHLH48 isoform X1
RefseqXP_012485588.11e-159PREDICTED: transcription factor bHLH48 isoform X2
RefseqXP_012485591.11e-159PREDICTED: transcription factor bHLH48 isoform X4
SwissprotQ8VZ023e-57BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0D2S3751e-177A0A0D2S375_G
STRINGVIT_08s0007g07870.t011e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-49bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]